Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 1
1 3 4
2 3 4
3 3 4
4 3 4
5 13 17

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 258 264
Multiple Base Substitutions 15 15
Deletions 20 88
Insertions 4 37
Mobile Element Insertions 5 25
Amplifications 10 10
Gene Conversions 0 0
Inversions 0 0
Total 312 439

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 8 0 128.6 4165486 96.0% 3998866 149.6
A1 F7 I1 R1 7 0 38.7 1387306 96.5% 1338750 133.9
A1 F15 I1 R1 8 0 40.3 1456528 96.3% 1402636 133.3
A1 F35 I0 R1 338 0 60.8 3106128 78.2% 2428992 142.5
A1 F35 I1 R1 10 0 104.0 3457386 97.9% 3384780 143.6
A2 F7 I1 R1 8 0 39.7 1405716 96.7% 1359327 136.2
A2 F15 I1 R1 9 0 36.2 1317874 96.5% 1271748 132.1
A2 F36 I0 R1 80 0 95.4 3476014 97.7% 3396065 133.8
A2 F36 I1 R1 9 0 107.0 3793126 97.8% 3709677 139.3
A3 F8 I1 R1 10 0 32.8 1234644 96.3% 1188962 128.0
A3 F15 I1 R1 10 0 34.7 1290222 96.6% 1246354 128.9
A3 F36 I0 R1 141 0 81.4 2739672 97.2% 2662961 142.9
A3 F36 I1 R1 10 0 110.6 3657964 98.0% 3584804 143.9
A4 F8 I1 R1 11 0 33.4 1306760 96.6% 1262330 122.7
A4 F16 I1 R1 10 0 35.0 1256272 95.4% 1198483 136.0
A4 F36 I0 R1 111 0 89.1 3136336 98.1% 3076745 142.5
A4 F36 I1 R1 14 0 89.5 2915230 98.1% 2859840 144.1

Mutation Needle Plot

Mutation Targets

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