Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 1
1 3 4
2 3 4
3 3 4
4 2 3
5 12 16

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 13 37
Multiple Base Substitutions 0 0
Deletions 22 108
Insertions 5 38
Mobile Element Insertions 5 10
Amplifications 2 2
Gene Conversions 0 0
Inversions 0 0
Total 47 195

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 10 0 119.5 4019254 94.3% 3790156 146.7
A1 F7 I1 R1 12 0 33.0 1281000 96.0% 1229760 124.4
A1 F16 I1 R1 11 0 31.6 1244628 95.8% 1192353 123.2
A1 F36 I0 R1 113 0 97.1 3286672 97.8% 3214365 142.1
A1 F36 I1 R1 12 0 83.2 2710244 97.8% 2650618 143.7
A2 F7 I1 R1 10 0 34.5 1343296 96.7% 1298967 123.1
A2 F14 I1 R1 10 0 34.0 1230124 94.9% 1167387 135.7
A2 F33 I0 R1 54 0 125.7 4418414 97.9% 4325627 136.3
A2 F33 I1 R1 11 0 89.0 3033336 97.9% 2969635 139.6
A3 F7 I1 R1 11 0 43.1 1475826 97.6% 1440406 133.0
A3 F15 I1 R1 9 0 35.9 1428054 96.4% 1376644 120.9
A3 F36 I0 R1 247 0 58.3 1958828 98.1% 1921610 141.9
A3 F36 I1 R1 11 0 33.0 1123854 97.7% 1098005 140.3
A4 F15 I1 R1 9 0 41.9 1479858 96.4% 1426583 136.2
A4 F34 I0 R1 171 0 94.3 3234150 97.6% 3156530 140.2
A4 F34 I1 R1 11 0 81.3 2752766 97.7% 2689452 140.9

Mutation Needle Plot

Mutation Targets

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