Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 1
1 3 3
2 3 3
3 3 3
4 3 4
5 13 14

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 34 88
Multiple Base Substitutions 0 0
Deletions 21 94
Insertions 7 36
Mobile Element Insertions 4 24
Amplifications 40 40
Gene Conversions 0 0
Inversions 0 0
Total 106 282

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 12 0 93.4 3336394 91.1% 3039454 143.5
A1 F3 I1 R1 15 0 28.0 1143766 97.4% 1114028 135.9
A1 F47 I1 R1 19 0 28.1 1106256 97.8% 1081918 136.0
A1 F87 I1 R1 22 0 84.3 3290658 97.6% 3211682 138.4
A2 F2 I1 R1 13 0 29.1 961540 98.8% 950001 141.3
A2 F43 I1 R1 23 0 34.4 1194698 96.8% 1156467 139.5
A2 F79 I1 R1 21 0 95.2 3174666 97.7% 3101648 140.1
A3 F2 I1 R1 15 0 39.5 1304580 98.1% 1279792 140.7
A3 F36 I1 R1 22 0 37.6 1496218 97.1% 1452827 127.7
A3 F68 I1 R1 24 0 78.6 3085910 98.1% 3027277 142.9
A4 F4 I1 R1 17 0 37.4 1246952 98.2% 1224506 142.8
A4 F40 I1 R1 29 0 30.2 1007882 98.6% 993771 143.0
A4 F81 I0 R1 263 0 75.1 3021180 96.0% 2900332 137.4
A4 F81 I1 R1 22 0 78.8 2834210 97.1% 2752017 142.6

Mutation Needle Plot

Mutation Targets

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