Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
0 1 1
1 3 4
2 3 4
3 3 4
4 3 4
5 13 17

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 9 50
Multiple Base Substitutions 0 0
Deletions 11 103
Insertions 3 34
Mobile Element Insertions 6 43
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 29 230

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A0 F0 I1 R1 11 0 96.3 3324772 92.2% 3065439 146.1
A1 F8 I1 R1 12 0 40.0 1456424 96.6% 1406905 131.7
A1 F18 I1 R1 13 0 34.3 1532790 95.7% 1466880 119.2
A1 F42 I0 R1 131 0 84.3 2910754 96.9% 2820520 141.4
A1 F42 I1 R1 12 0 89.3 3019708 98.3% 2968372 142.0
A2 F9 I1 R1 14 0 42.2 1563114 96.6% 1509968 129.7
A2 F20 I1 R1 14 0 33.7 1245814 95.8% 1193489 131.1
A2 F45 I0 R1 112 0 98.6 3519426 98.4% 3463115 132.9
A2 F45 I1 R1 13 0 88.2 3257152 97.6% 3178980 142.0
A3 F8 I1 R1 13 0 37.8 1375060 96.2% 1322807 132.4
A3 F17 I1 R1 13 0 33.4 1359916 96.2% 1308239 132.0
A3 F42 I0 R1 94 0 95.9 3342350 97.8% 3268818 139.2
A3 F42 I1 R1 13 0 98.5 3299972 97.9% 3230672 141.8
A4 F9 I1 R1 15 0 34.9 1242836 97.1% 1206793 134.2
A4 F20 I1 R1 14 0 37.4 1396804 96.3% 1345122 129.2
A4 F45 I0 R1 103 0 99.6 3378332 97.9% 3307387 140.9
A4 F45 I1 R1 13 0 87.3 3015712 98.0% 2955397 141.5

Mutation Needle Plot

Mutation Targets

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